Papers

• Google Scholar
• PubMed
• ORCID
• Impactstory

Slides

• RECOMB 2018 and ISMB 2017 • Tigmint: Correcting Misassemblies Using Linked Reads From Large Molecules
• RECOMB 2018 • ABySS 2.0: Resource-efficient assembly of large genomes using a Bloom filter
• PAG 2017 • Organellar Genomes of Sitka Spruce (Picea sitchensis): Assembly and Annotation
• SMRT Informatics Developers Conference 2017 • Graphical Fragment Assembly (GFA) 2.0
• ISMB 2016 • Homebrewing Science with Linuxbrew and Homebrew
• STAT545 2015 • Automating Data-analysis Pipelines using R and Make • hands-on activity
• VanBUG 2014 • Open, reproducible science using Make, RMarkdown and Pandoc
• More slides on Speaker Deck and SlideShare

Posters

• ISMB 2019 • Physlr: Construct a Physical Map from Linked Reads
• RECOMB 2018 and ISMB 2017 • Tigmint: Correcting Misassemblies Using Linked Reads From Large Molecules
• PAG 2017, AGBT 2017 • Organellar Genomes of Sitka Spruce (Picea sitchensis): Assembly and Annotation
• ISMB 2016 BOSC • Linuxbrew and Homebrew for Cross-platform Package Management
• ISMB 2016 HiTSeq • Organellar Genomes of White spruce (Picea glauca): Assembly and annotation
• RECOMB 2015 • Scaling ABySS to Longer Reads Using Spaced k-mers and Bloom Filters
• ISMB 2014 • ABySS-Konnector: Connecting Paired-end Reads by Navigating a bloom Filter de Bruijn Graph
• PAG 2014 • Assembling the Genomes of the Plastid and Mitochondrion of White Spruce (Picea glauca)
• APBC 2013 • Scaffolding Large Genomes Using Mate-pair Sequencing and ABySS
• BCCDC 2013 • Outbreak Investigation of Salmonella enteritidis Using Genomic Epidemiology
• STAT540 2013 • Analysis of Gene Expression Omnibus Leukaemia Data from the Illumina HumanMethylation450 Array